Data¶

Summary Table¶

The subject-level analysis table used by most plots and statistics. See also: Summary table.

A per-marker table imported from FLASH/ImageJ outputs before summaries are assembled. See also: Marker tables.

The table of imported image metadata, including marker, subject, ROI, and path columns. See also: Image table.

A table organized by region of interest or ROI-derived measurements. See also: ROI tables.

The stable subject identifier column used internally and by most grouped plots. See also: Summary table.

The stable internal group label column. See also: Groups and factors.

A column such as genotype, sex, or timepoint used to build or split groups. See also: Groups and factors.

A named anatomical or analysis region in imported tables. See also: ROI parameters.

A region-of-interest identifier. See also: ROI tables.

An image-level ROI identifier used when matching image panels back to imported metadata. See also: Image table.

A special placeholder value, such as an exclusion marker, that should not be treated as a numeric measurement. See also: Exclusion ledgers.

A record of excluded or manually flagged values. See also: Exclusion ledgers.

A JSON-like definition of groups, colors, factors, and comparisons. See also: Group specs.

A YAML, TOML, or JSON file describing one or more plots to run. See also: Plot spec files.

A saved JSON record of pipeline inputs, options, and outputs. See also: Pipeline manifests.

A saved Python object state file, usually ending in .pkl. See also: Pickle files.

An exported .xlsx file containing selected PyFLASH tables. See also: Excel workbooks.

An output folder for one pipeline or modelling run. See also: Pipeline run folders.

A structured record used by reporting and pipeline outputs. See also: Report records.