Workflows¶
Workflow pages show how common tasks fit together across PyFLASH objects, functions, plots, and saved outputs. They are not exhaustive parameter references; each page links to the detailed function and output pages.
Start With Data¶
| Page | Use it when |
|---|---|
| Create a batch | You have FLASH/ImageJ experiment folders and want a reusable Batch. |
| Build groups | You need simple, comparison, or crossed group metadata before importing or plotting. |
| Load and rebase a pickle | You already have a saved PyFLASH .pkl, especially one moved between machines. |
Make Plots And Pipelines¶
| Page | Use it when |
|---|---|
| Plot from Python | You want direct plot calls in a script or notebook. |
| Plot from a spec | You want a reusable YAML, TOML, or JSON batch of plots and pipelines. |
| Run correlation pipeline | You want pairwise correlations, matrix outputs, selected pairs, and optional regressions. |
| Run adjusted linear model | You want adjusted model coefficients, adjusted means, and contrasts. |
| Run model sweep | You want a classifier feature-subset discovery screen. |
Save Or Use The UI¶
| Page | Use it when |
|---|---|
| Export Excel workbooks | You need collaborator-friendly .xlsx summaries from a Batch. |
| Use the Streamlit UI | You prefer the optional point-and-click interface for loading, plotting, and exporting. |