Plots¶

Mean Bars¶

Grouped summary bars with optional points and statistical annotations. See also: Mean bars.

Matrix Plot¶

A heatmap-style plot of values across markers, regions, groups, or comparisons. See also: Matrix plots.

Rect Matrix¶

A rectangular matrix plot for non-square value layouts. See also: plot_rect_matrices.

Matrix Difference¶

A matrix plot showing differences between groups or conditions. See also: plot_matrix_differences.

Volcano Plot¶

A plot that combines effect or change size with statistical evidence. See also: plot_volcano.

Regression Plot¶

A plot of one variable against another with model or trend information. See also: Regression plots.

Multivariable Regression Matrix¶

A matrix-style view of multivariable regression outputs. See also: plot_multivariable_regression_matrix.

Distribution Plot¶

A histogram, ECDF, or ridgeline view of value distributions. See also: Distribution plots.

Ridgeline¶

Stacked, smoothed density curves for comparing a value's distribution across many groups in one figure (also called a joyplot). See also: plot_ridgeline.

ECDF¶

Empirical cumulative distribution function: a binless cumulative curve of a value's distribution. See also: plot_ecdf.

Pie Chart¶

A categorical proportion plot. See also: plot_pie_charts.

Combo Pie¶

A pie chart for marker-combination categories. See also: plot_combo_pies.

Sankey Plot¶

A flow diagram for category transitions or relationships. See also: plot_coloc_sankey.

UpSet Plot¶

A set-intersection plot for marker combinations. See also: plot_coloc_upset.

Radar Plot¶

A polar plot comparing multiple normalized measurements. See also: plot_radar.

PCA Plot¶

A principal component analysis summary of marker features. See also: plot_marker_pca.

Timecourse Plot¶

A plot of values across ordered time points. See also: plot_timecourse.

Power Curve¶

A plot estimating power across sample sizes or effect sizes. See also: plot_power_curve.

Image Grid¶

A grid of imported microscopy images. See also: Image panels.

Representative Panel¶

A curated image panel built from representative image selections. See also: plot_representative_images.

Location Plot¶

A spatial or location-based view of imported regions or objects. See also: Location plots.

Superplot¶

A grouped plot that emphasizes subject-level values as well as group summaries. See also: plot_superplot.

Effect Forest¶

A forest-style plot of effect sizes and confidence intervals. See also: plot_effect_forest.

Group Matrix¶

A matrix-style comparison of group-level effects. See also: plot_group_matrix.

Cosinor Plot¶

A rhythm plot from cosinor model outputs. See also: plot_cosinor.

Acrophase Clock¶

A circular rhythm plot for phase timing. See also: plot_acrophase_clock.